Free memory from tree

We need to clean up the tree when we're done with it to avoid memory leaks in the code

Id #5403 | Release: None | Updated: Jan 21, 2013 at 11:05 PM by bdelgado | Created: Aug 16, 2009 at 7:45 AM by bdelgado

closed:parallel parameter

I did debug searchtree function to see what exactly which variable is storing the retrun search string. This parameter need to be passed into parallel function.

Id #5008 | Release: None | Updated: Jan 21, 2013 at 11:05 PM by bdelgado | Created: Jul 14, 2009 at 5:12 AM by onaolapo

statistics graph

Graph the search or stats results in an attractive way, via gnuplot or some other means.

Id #4774 | Release: None | Updated: Jan 21, 2013 at 11:05 PM by bdelgado | Created: Jul 8, 2009 at 6:02 AM by bdelgado

Partial search matches: (Partially done)

Add ability to do partial matches of a string. For example, a string from the input file that matches the [first | middle | last] N characters of the search string.

Id #4773 | Release: None | Updated: Jan 21, 2013 at 11:05 PM by bdelgado | Created: Jul 8, 2009 at 6:00 AM by bdelgado

Closed: Read in searches from a file

We need someone to add code to read in multiple searches from a file. E.g. something like:   ACCTAAAACT <-- Search #1 CATACCCTGG <-- Search #2 GGAACCAATC <-- Search #3

Id #4772 | Release: None | Updated: Jan 21, 2013 at 11:05 PM by bdelgado | Created: Jul 8, 2009 at 5:57 AM by bdelgado

Closed: Parallel searches

We need somebody to use pthreads or another mechanism to search the tree in parallel for multiple searches. We want to get good scalability out of multi-core processors when doing multiple concurre...

Id #4771 | Release: None | Updated: Jan 21, 2013 at 11:05 PM by onaolapo | Created: Jul 8, 2009 at 5:55 AM by bdelgado

Closed: Create other three permutations of search string and search for them also

-- Permutations --   We need to search all four permutations of a search string like I showed in the powerpoint file. For example, if somebody wants to search for the first string below, we also n...

Id #4770 | Release: None | Updated: Jan 21, 2013 at 11:05 PM by bdelgado | Created: Jul 8, 2009 at 5:54 AM by bdelgado

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